Sign in to edit your profile (add interests, overview, photo, etc.)
    LBNL Profiles Metrics
    22822 Publications
    3073 Total Profiles
    18 Edited Profiles

    Hamann, Bernd

    TitleComputer Scientist Faculty
    SchoolLawrence Berkeley National Lab
    DepartmentComputational Research
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-6135

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Isaacs KE, Bremer PT, Jusufi I, Gamblin T, Bhatele A, Schulz M, Hamann B. Combing the Communication Hairball: Visualizing Parallel Execution Traces using Logical Time. IEEE Trans Vis Comput Graph. 2014 Dec; 20(12):2349-58.
        View in: PubMed
      2. Shafii S, Obermaier H, Linn R, Koo E, Hlawitschka M, Garth C, Hamann B, Joy KI. Visualization and analysis of vortex-turbine intersections in wind farms. IEEE Trans Vis Comput Graph. 2013 Sep; 19(9):1579-91.
        View in: PubMed
      3. Westerteiger R, Compton T, Bernadin T, Cowgill E, Gwinner K, Hamann B, Gerndt A, Hagen H. Interactive Retro-Deformation of Terrain for Reconstructing 3D Fault Displacements. IEEE Trans Vis Comput Graph. 2012 Dec; 18(12):2208-15.
        View in: PubMed
      4. Engel D, Greff K, Garth C, Bein K, Wexler A, Hamann B, Hagen H. Visual Steering and Verification of Mass Spectrometry Data Factorization in Air Quality Research. IEEE Trans Vis Comput Graph. 2012 Dec; 18(12):2275-84.
        View in: PubMed
      5. Williams S, Petersen M, Bremer PT, Hecht M, Pascucci V, Ahrens J, Hlawitschka M, Hamann B. Adaptive extraction and quantification of geophysical vortices. IEEE Trans Vis Comput Graph. 2011 Dec; 17(12):2088-95.
        View in: PubMed
      6. Stevens EW, Sumner DY, Harwood CL, Crutchfield JP, Hamann B, Kreylos O, Puckett E, Senge P. Understanding microbialite morphology using a comprehensive suite of three-dimensional analysis tools. Astrobiology. 2011 Jul-Aug; 11(6):509-18.
        View in: PubMed
      7. Hummel M, Garth C, Hamann B, Hagen H, Joy KI. IRIS: illustrative rendering for integral surfaces. IEEE Trans Vis Comput Graph. 2010 Nov-Dec; 16(6):1319-28.
        View in: PubMed
      8. Rübel O, Weber GH, Huang MY, Bethel EW, Biggin MD, Fowlkes CC, Luengo Hendriks CL, Keränen SV, Eisen MB, Knowles DW, Malik J, Hagen H, Hamann B. Integrating data clustering and visualization for the analysis of 3D gene expression data. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar; 7(1):64-79.
        View in: PubMed
      9. Hlawitschka M, Garth C, Tricoche X, Kindlmann G, Scheuermann G, Joy KI, Hamann B. Direct visualization of fiber information by coherence. Int J Comput Assist Radiol Surg. 2010 Mar; 5(2):125-31.
        View in: PubMed
      10. Weber GH, Rübel O, Huang MY, DePace AH, Fowlkes CC, Keränen SV, Luengo Hendriks CL, Hagen H, Knowles DW, Malik J, Biggin MD, Hamann B. Visual exploration of three-dimensional gene expression using physical views and linked abstract views. IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun; 6(2):296-309.
        View in: PubMed
      11. Zawadzki RJ, Choi SS, Fuller AR, Evans JW, Hamann B, Werner JS. Cellular resolution volumetric in vivo retinal imaging with adaptive optics-optical coherence tomography. Opt Express. 2009 Mar 2; 17(5):4084-94.
        View in: PubMed
      12. Gyulassy A, Bremer PT, Hamann B, Pascucci V. A practical approach to Morse-Smale complex computation: scalability and generality. IEEE Trans Vis Comput Graph. 2008 Nov-Dec; 14(6):1619-26.
        View in: PubMed
      13. Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm. Cell. 2008 Apr 18; 133(2):364-74.
        View in: PubMed
      14. Feng L, Hotz I, Hamann B, Joy K. Anisotropic noise samples. IEEE Trans Vis Comput Graph. 2008 Mar-Apr; 14(2):342-54.
        View in: PubMed
      15. Gyulassy A, Duchaineau M, Natarajan V, Pascucci V, Bringa E, Higginbotham A, Hamann B. Topologically clean distance fields. IEEE Trans Vis Comput Graph. 2007 Nov-Dec; 13(6):1432-9.
        View in: PubMed
      16. Fuller A, Zawadzki R, Choi S, Wiley D, Werner J, Hamann B. Segmentation of three-dimensional retinal image data. IEEE Trans Vis Comput Graph. 2007 Nov-Dec; 13(6):1719-26.
        View in: PubMed
      17. Schlemmer M, Heringer M, Morr F, Hotz I, Hering-Bertram M, Garth C, Kollmann W, Hamann B, Hagen H. Moment invariants for the analysis of 2D flow fields. IEEE Trans Vis Comput Graph. 2007 Nov-Dec; 13(6):1743-50.
        View in: PubMed
      18. Gyulassy A, Natarajan V, Pascucci V, Hamann B. Efficient computation of Morse-Smale complexes for three-dimensional scalar functions. IEEE Trans Vis Comput Graph. 2007 Nov-Dec; 13(6):1440-7.
        View in: PubMed
      19. Dillard S, Bingert J, Thoma D, Hamann B. Construction of simplified boundary surfaces from serial-sectioned metal micrographs. IEEE Trans Vis Comput Graph. 2007 Nov-Dec; 13(6):1528-35.
        View in: PubMed
      20. Staadt OG, Natarajan V, Weber GH, Wiley DF, Hamann B. Interactive processing and visualization of image data for biomedical and life science applications. BMC Cell Biol. 2007; 8 Suppl 1:S10.
        View in: PubMed
      21. Zawadzki RJ, Fuller AR, Wiley DF, Hamann B, Choi SS, Werner JS. Adaptation of a support vector machine algorithm for segmentation and visualization of retinal structures in volumetric optical coherence tomography data sets. J Biomed Opt. 2007 Jul-Aug; 12(4):041206.
        View in: PubMed
      22. Weber GH, Dillard SE, Carr H, Pascucci V, Hamann B. Topology-controlled volume rendering. IEEE Trans Vis Comput Graph. 2007 Mar-Apr; 13(2):330-41.
        View in: PubMed
      23. Samsioe G, Dvorak V, Genazzani AR, Hamann B, Heikkinen J, Mueck AO, Suzin J, Kawakami FT, Ferreira A, Sun D, Arguinzoniz M. One-year endometrial safety evaluation of a continuous combined transdermal matrix patch delivering low-dose estradiol-norethisterone acetate in postmenopausal women. Maturitas. 2007 Jun 20; 57(2):171-81.
        View in: PubMed
      24. Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I. TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. Bioinformatics. 2007 Mar 15; 23(6):764-6.
        View in: PubMed
      25. Gyulassy A, Natarajan V, Pascucci V, Bremer PT, Society C, Hamann B. A topological approach to simplification of three-dimensional scalar functions. IEEE Trans Vis Comput Graph. 2006 Jul-Aug; 12(4):474-84.
        View in: PubMed
      26. Park SW, Linsen L, Kreylos O, Owens JD, Hamann B. Discrete Sibson interpolation. IEEE Trans Vis Comput Graph. 2006 Mar-Apr; 12(2):243-53.
        View in: PubMed
      27. Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline. Genome Biol. 2006; 7(12):R123.
        View in: PubMed
      28. Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL. SNP-VISTA: an interactive SNP visualization tool. BMC Bioinformatics. 2005; 6:292.
        View in: PubMed
      29. Wiley DF, Bertram M, Hamann B. On a construction of a hierarchy of best linear spline approximations using a finite element approach. IEEE Trans Vis Comput Graph. 2004 Sep-Oct; 10(5):548-63.
        View in: PubMed
      30. Bremer PT, Edelsbrunner H, Hamann B, Pascucci V. A topological hierarchy for functions on triangulated surfaces. IEEE Trans Vis Comput Graph. 2004 Jul-Aug; 10(4):385-96.
        View in: PubMed
      31. Bertram M, Duchaineau MA, Hamann B, Joy KI. Generalized B-spline subdivision-surface wavelets for geometry compression. IEEE Trans Vis Comput Graph. 2004 May-Jun; 10(3):326-38.
        View in: PubMed
      32. Crivelli S, Kreylos O, Hamann B, Max N, Bethel W. ProteinShop: a tool for interactive protein manipulation and steering. J Comput Aided Mol Des. 2004 Apr; 18(4):271-85.
        View in: PubMed
      33. Mahrous K, Bennett J, Scheuermann G, Hamann B, Joy KI. Topological segmentation in three-dimensional vector fields. IEEE Trans Vis Comput Graph. 2004 Mar-Apr; 10(2):198-205.
        View in: PubMed
      34. Shah N, Couronne O, Pennacchio LA, Brudno M, Batzoglou S, Bethel EW, Rubin EM, Hamann B, Dubchak I. Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics. 2004 Mar 22; 20(5):636-43.
        View in: PubMed
      Back to TOP