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    Sarker, Altaf

    TitleBiologist Scientist/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentBiological Systems & Eng
    Address1 Cyclotron Road
    Berkeley CA 94720
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      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Tsutakawa SE, Thompson MJ, Arvai AS, Neil AJ, Shaw SJ, Algasaier SI, Kim JC, Finger LD, Jardine E, Gotham VJB, Sarker A, Her MZ, Rashid F, Hamdan SM, Mirkin SM, Grasby JA, Tainer JA. Phosphate steering by Flap Endonuclease 1 promotes 5'-flap specificity and incision to prevent genome instability. Nat Commun. 2017 Jun 27; 8:15855. PMID: 28653660.
        View in: PubMed
      2. Hang B, Wang P, Zhao Y, Sarker A, Chenna A, Xia Y, Snijders AM, Mao JH. Adverse Health Effects of Thirdhand Smoke: From Cell to Animal Models. Int J Mol Sci. 2017 Apr 28; 18(5). PMID: 28452951.
        View in: PubMed
      3. Yang C, Sengupta S, Hegde PM, Mitra J, Jiang S, Holey B, Sarker A, Tsai MS, Hegde ML, Mitra S. Regulation of oxidized base damage repair by chromatin assembly factor 1 subunit A. Nucleic Acids Res. 2017 Jan 25; 45(2):739-748. PMID: 27794043.
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      4. Chakraborty A, Tapryal N, Venkova T, Horikoshi N, Pandita RK, Sarker A, Sarkar PS, Pandita TK, Hazra TK. Classical non-homologous end-joining pathway utilizes nascent RNA for error-free double-strand break repair of transcribed genes. Nat Commun. 2016 Oct 05; 7:13049. PMID: 27703167.
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      5. Dhall S, Alamat R, Castro A, Sarker A, Mao JH, Chan A, Hang B, Martins-Green M. Tobacco toxins deposited on surfaces (third hand smoke) impair wound healing. Clin Sci (Lond). 2016 Jul 01; 130(14):1269-84. PMID: 27129193.
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      6. Chakraborty A, Wakamiya M, Venkova-Canova T, Pandita RK, Aguilera-Aguirre L, Sarker A, Singh DK, Hosoki K, Wood TG, Sharma G, Cardenas V, Sarkar PS, Sur S, Pandita TK, Boldogh I, Hazra TK. Neil2-null Mice Accumulate Oxidized DNA Bases in the Transcriptionally Active Sequences of the Genome and Are Susceptible to Innate Inflammation. J Biol Chem. 2015 Oct 09; 290(41):24636-48. PMID: 26245904; PMCID: PMC4598976 [Available on 10/09/16].
      7. Barnhoorn S, Uittenboogaard LM, Jaarsma D, Vermeij WP, Tresini M, Weymaere M, Menoni H, Brandt RM, de Waard MC, Botter SM, Sarker A, Jaspers NG, van der Horst GT, Cooper PK, Hoeijmakers JH, van der Pluijm I. Cell-autonomous progeroid changes in conditional mouse models for repair endonuclease XPG deficiency. PLoS Genet. 2014 Oct; 10(10):e1004686. PMID: 25299392; PMCID: PMC4191938.
      8. Sarker A, Chatterjee A, Williams M, Lin S, Havel C, Jacob P, Boldogh I, Hazra TK, Talbot P, Hang B. NEIL2 protects against oxidative DNA damage induced by sidestream smoke in human cells. PLoS One. 2014; 9(3):e90261. PMID: 24595271; PMCID: PMC3945017.
      9. Hang B, Sarker A, Havel C, Saha S, Hazra TK, Schick S, Jacob P, Rehan VK, Chenna A, Sharan D, Sleiman M, Destaillats H, Gundel LA. Thirdhand smoke causes DNA damage in human cells. Mutagenesis. 2013 Jul; 28(4):381-91. PMID: 23462851; PMCID: PMC3681537.
      10. Dey S, Maiti AK, Hegde ML, Hegde PM, Boldogh I, Sarkar PS, Abdel-Rahman SZ, Sarker A, Hang B, Xie J, Tomkinson AE, Zhou M, Shen B, Wang G, Wu C, Yu D, Lin D, Cardenas V, Hazra TK. Increased risk of lung cancer associated with a functionally impaired polymorphic variant of the human DNA glycosylase NEIL2. DNA Repair (Amst). 2012 Jun 01; 11(6):570-8. PMID: 22497777; PMCID: PMC3361577.
      11. Tsutakawa SE, Classen S, Chapados BR, Arvai AS, Finger LD, Guenther G, Tomlinson CG, Thompson P, Sarker A, Shen B, Cooper PK, Grasby JA, Tainer JA. Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily. Cell. 2011 Apr 15; 145(2):198-211. PMID: 21496641; PMCID: PMC3086263.
      12. Sarker A, Tsutakawa SE, Kostek S, Ng C, Shin DS, Peris M, Campeau E, Tainer JA, Nogales E, Cooper PK. Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome. Mol Cell. 2005 Oct 28; 20(2):187-98. PMID: 16246722.
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      13. Emoto M, Miki M, Sarker A, Nakamura T, Seki Y, Seki S, Ikeda S. Structure and transcription promoter activity of mouse flap endonuclease 1 gene: alternative splicing and bidirectional promoter. Gene. 2005 Aug 29; 357(1):47-54. PMID: 15967598.
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      14. Wang JY, Sarker A, Cooper PK, Volkert MR. The single-strand DNA binding activity of human PC4 prevents mutagenesis and killing by oxidative DNA damage. Mol Cell Biol. 2004 Jul; 24(13):6084-93. PMID: 15199162; PMCID: PMC480877.
      15. Sarker A, Ikeda S, Nakano H, Terato H, Ide H, Imai K, Akiyama K, Tsutsui K, Bo Z, Kubo K, Yamamoto K, Yasui A, Yoshida MC, Seki S. Cloning and characterization of a mouse homologue (mNthl1) of Escherichia coli endonuclease III. J Mol Biol. 1998 Oct 02; 282(4):761-74. PMID: 9743625.
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      16. Ikeda S, Biswas T, Roy R, Izumi T, Boldogh I, Kurosky A, Sarker A, Seki S, Mitra S. Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue. J Biol Chem. 1998 Aug 21; 273(34):21585-93. PMID: 9705289.
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