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    Deutschbauer, Adam

    TitleBiologist Research Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-5473
    vCardDownload vCard

      Collapse Bibliographic 
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Wu X, Deutschbauer A, Kazakov AE, Wetmore KM, Cwick BA, Walker RM, Novichkov PS, Arkin AP, Chakraborty R. Draft Genome Sequences of Two Janthinobacteriumlividum Strains, Isolated from Pristine Groundwater Collected from the Oak Ridge Field Research Center. Genome Announc. 2017 Jun 29; 5(26). PMID: 28663297.
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      2. Sagawa S, Price MN, Deutschbauer A, Arkin AP. Validating regulatory predictions from diverse bacteria with mutant fitness data. PLoS One. 2017; 12(5):e0178258. PMID: 28542589.
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      3. Haliburton JR, Shao W, Deutschbauer A, Arkin A, Abate AR. Genetic interaction mapping with microfluidic-based single cell sequencing. PLoS One. 2017; 12(2):e0171302. PMID: 28170417.
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      4. Bosak T, Schubotz F, de Santiago-Torio A, Kuehl JV, Carlson HK, Watson N, Daye M, Summons RE, Arkin AP, Deutschbauer A. System-Wide Adaptations of Desulfovibrio alaskensis G20 to Phosphate-Limited Conditions. PLoS One. 2016; 11(12):e0168719. PMID: 28030630.
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      5. Price MN, Wetmore KM, Deutschbauer A, Arkin AP. A Comparison of the Costs and Benefits of Bacterial Gene Expression. PLoS One. 2016; 11(10):e0164314. PMID: 27711251.
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      6. Vaccaro BJ, Lancaster WA, Thorgersen MP, Zane GM, Younkin AD, Kazakov AE, Wetmore KM, Deutschbauer A, Arkin AP, Novichkov PS, Wall JD, Adams MW. Novel Metal Cation Resistance Systems from Mutant Fitness Analysis of Denitrifying Pseudomonas stutzeri. Appl Environ Microbiol. 2016 Oct 1; 82(19):6046-56. PMID: 27474723.
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      7. Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer A, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J. Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. MBio. 2016; 7(2). PMID: 27048805.
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      8. Kosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, Singh AK, Arkin AP, Deutschbauer A, Northen TR. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. ACS Synth Biol. 2016 Jul 15; 5(7):569-76. PMID: 26885935.
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      9. Blow MJ, Clark TA, Daum CG, Deutschbauer A, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, Rubin EM, Korlach J, Pennacchio LA, Roberts RJ. The Epigenomic Landscape of Prokaryotes. PLoS Genet. 2016 Feb; 12(2):e1005854. PMID: 26870957.
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      10. Clark IC, Youngblut M, Jacobsen G, Wetmore KM, Deutschbauer A, Lucas L, Coates JD. Genetic dissection of chlorate respiration in Pseudomonas stutzeri PDA reveals syntrophic (per)chlorate reduction. Environ Microbiol. 2016 Oct; 18(10):3342-3354. PMID: 26411776.
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      11. Rubin BE, Wetmore KM, Price MN, Diamond S, Shultzaberger RK, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proc Natl Acad Sci U S A. 2015 Dec 1; 112(48):E6634-43. PMID: 26508635.
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      12. Vaccaro BJ, Thorgersen MP, Lancaster WA, Price MN, Wetmore KM, Poole FL, Deutschbauer A, Arkin AP, Adams MW. Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses. Appl Environ Microbiol. 2015; 82(1):51-61. PMID: 26452555.
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      13. Thorgersen MP, Lancaster WA, Vaccaro BJ, Poole FL, Rocha AM, Mehlhorn T, Pettenato A, Ray J, Waters RJ, Melnyk RA, Chakraborty R, Hazen TC, Deutschbauer A, Arkin AP, Adams MW. Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments. Appl Environ Microbiol. 2015 Aug 1; 81(15):4976-83. PMID: 25979890.
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      14. Ray J, Waters RJ, Skerker JM, Kuehl JV, Price MN, Huang J, Chakraborty R, Arkin AP, Deutschbauer A. Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site. Genome Announc. 2015; 3(3). PMID: 25977418.
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      15. Wetmore KM, Price MN, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. MBio. 2015; 6(3). PMID: 25968644.
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      16. Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price MN, Iavarone AT, Deutschbauer A, Arkin AP, Coates JD. Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase. MBio. 2015; 6(3). PMID: 25968643.
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      17. Carlson HK, Stoeva MK, Justice NB, Sczesnak A, Mullan MR, Mosqueda LA, Kuehl JV, Deutschbauer A, Arkin AP, Coates JD. Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms. Environ Sci Technol. 2015 Mar 17; 49(6):3727-36. PMID: 25698072.
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      18. Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price MN, Deutschbauer A, Arkin AP, Coates JD. Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate. ISME J. 2015 Jun; 9(6):1295-305. PMID: 25405978.
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      19. Price MN, Ray J, Wetmore KM, Kuehl JV, Bauer S, Deutschbauer A, Arkin AP. The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Front Microbiol. 2014; 5:577. PMID: 25400629.
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      20. Deutschbauer A, Price MN, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM. Towards an informative mutant phenotype for every bacterial gene. J Bacteriol. 2014 Oct 15; 196(20):3643-55. PMID: 25112473.
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      21. Shao W, Price MN, Deutschbauer A, Romine MF, Arkin AP. Conservation of Transcription Start Sites within Genes across a Bacterial Genus. MBio. 2014; 5(4). PMID: 24987095.
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      22. Gowda H, Ivanisevic J, Johnson CH, Kurczy ME, Benton HP, Rinehart D, Nguyen T, Ray J, Kuehl J, Arevalo B, Westenskow PD, Wang J, Arkin AP, Deutschbauer A, Patti GJ, Siuzdak G. Interactive XCMS Online: Simplifying Advanced Metabolomic Data Processing and Subsequent Statistical Analyses. Anal Chem. 2014 Jul 15; 86(14):6931-9. PMID: 24934772.
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      23. Rinehart D, Johnson CH, Nguyen T, Ivanisevic J, Benton HP, Lloyd J, Arkin AP, Deutschbauer A, Patti GJ, Siuzdak G. Metabolomic data streaming for biology-dependent data acquisition. Nat Biotechnol. 2014 Jun 9; 32(6):524-7. PMID: 24911492.
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      24. Kuehl JV, Price MN, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A. Functional Genomics with a Comprehensive Library of Transposon Mutants for the Sulfate-Reducing Bacterium Desulfovibrio alaskensis G20. MBio. 2014; 5(3). PMID: 24865553.
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      25. Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer A, Arkin AP, Wall JD. Genetic basis for nitrate resistance in Desulfovibrio strains. Front Microbiol. 2014; 5:153. PMID: 24795702.
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      26. Meyer B, Kuehl JV, Price MN, Ray J, Deutschbauer A, Arkin AP, Stahl DA. The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf. Environ Microbiol. 2014 Nov; 16(11):3463-86. PMID: 24447568.
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      27. Wilkening S, Lin G, Fritsch ES, Tekkedil MM, Anders S, Kuehn R, Nguyen M, Aiyar RS, Proctor M, Sakhanenko NA, Galas DJ, Gagneur J, Deutschbauer A, Steinmetz LM. An Evaluation of High-Throughput Approaches to QTL Mapping in Saccharomyces cerevisiae. Genetics. 2014 Mar; 196(3):853-65. PMID: 24374355.
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      28. Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Anal Chem. 2013 Nov 19; 85(22):10856-62. PMID: 24111681.
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      29. Novichkov PS, Li X, Kuehl JV, Deutschbauer A, Arkin AP, Price MN, Rodionov DA. Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria. Environ Microbiol. 2014 Jan; 16(1):1-8. PMID: 24118949.
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      30. Bendall ML, Luong K, Wetmore KM, Blow M, Korlach J, Deutschbauer A, Malmstrom RR. Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. J Bacteriol. 2013 Nov; 195(21):4966-74. PMID: 23995632.
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      31. Meyer B, Kuehl JV, Deutschbauer A, Arkin AP, Stahl DA. Flexibility of syntrophic enzyme systems in Desulfovibrio species ensures their adaptation capability to environmental changes. J Bacteriol. 2013 Nov; 195(21):4900-14. PMID: 23974031.
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      32. Skerker JM, Leon D, Price MN, Mar JS, Tarjan DR, Wetmore KM, Deutschbauer A, Baumohl JK, Bauer S, Ibáñez AB, Mitchell VD, Wu CH, Hu P, Hazen T, Arkin AP. Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates. Mol Syst Biol. 2013; 9:674. PMID: 23774757.
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      33. Price MN, Deutschbauer A, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP. Indirect and suboptimal control of gene expression is widespread in bacteria. Mol Syst Biol. 2013; 9:660. PMID: 23591776.
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      34. Brown SD, Utturkar SM, Arkin AP, Deutschbauer A, Elias DA, Hazen TC, Chakraborty R. Draft Genome Sequence for Desulfovibrio africanus Strain PCS. Genome Announc. 2013 Mar-Apr; 1(2):e0014413. PMID: 23580709.
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      35. Meyer B, Kuehl J, Deutschbauer A, Price MN, Arkin AP, Stahl DA. Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth. J Bacteriol. 2013 Mar; 195(5):990-1004. PMID: 23264581.
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      36. Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer A, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. ACS Chem Biol. 2013 Jan 18; 8(1):189-99. PMID: 23082955.
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      37. Bowen De León K, Young ML, Camilleri LB, Brown SD, Skerker JM, Deutschbauer A, Arkin AP, Fields MW. Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction. J Bacteriol. 2012 Oct; 194(19):5456-7. PMID: 22965085.
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      38. Deutschbauer A, Price MN, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. PLoS Genet. 2011 Nov; 7(11):e1002385. PMID: 22125499.
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      39. Price MN, Deutschbauer A, Kuehl JV, Liu H, Witkowska HE, Arkin AP. Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J Bacteriol. 2011 Oct; 193(20):5716-27. PMID: 21840973.
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      40. Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection. PLoS Pathog. 2010; 6(10):e1001140. PMID: 20949076.
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      41. Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Res. 2010 Aug; 38(14):e146. PMID: 20494978.
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      42. Tang YJ, Martin HG, Deutschbauer A, Feng X, Huang R, Llora X, Arkin A, Keasling JD. Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations. Biotechnol Prog. 2009 Sep-Oct; 25(5):1254-9. PMID: 19610125.
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      43. Tang YJ, Martin HG, Dehal PS, Deutschbauer A, Llora X, Meadows A, Arkin A, Keasling JD. Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism. Biotechnol Bioeng. 2009 Mar 1; 102(4):1161-9. PMID: 19031428.
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      44. McClellan AJ, Xia Y, Deutschbauer A, Davis RW, Gerstein M, Frydman J. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell. 2007 Oct 5; 131(1):121-35. PMID: 17923092.
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      45. Deutschbauer A, Chivian D, Arkin AP. Genomics for environmental microbiology. Curr Opin Biotechnol. 2006 Jun; 17(3):229-35. PMID: 16650754.
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      46. Deutschbauer A, Davis RW. Quantitative trait loci mapped to single-nucleotide resolution in yeast. Nat Genet. 2005 Dec; 37(12):1333-40. PMID: 16273108.
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      47. Deutschbauer A, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, Davis RW, Nislow C, Giaever G. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics. 2005 Apr; 169(4):1915-25. PMID: 15716499.
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      48. Petronczki M, Chwalla B, Siomos MF, Yokobayashi S, Helmhart W, Deutschbauer A, Davis RW, Watanabe Y, Nasmyth K. Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II. J Cell Sci. 2004 Jul 15; 117(Pt 16):3547-59. PMID: 15226378.
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      49. Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, Dumitrescu T, Fellous M, Goldman A, Grootegoed JA, Hawley R, Ishii R, Jégou B, Kaufman RJ, Klein F, Lamb N, Maro B, Nasmyth K, Nicolas A, Orr-Weaver T, Philippsen P, Pineau C, Rabitsch KP, Reinke V, Roest H, Saunders W, Schröder M, Schedl T, Siep M, Villeneuve A, Wolgemuth DJ, Yamamoto M, Zickler D, Esposito RE, Primig M. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Res. 2004 Jan 1; 32(Database issue):D560-7. PMID: 14681481.
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      50. Steinmetz LM, Deutschbauer A. Gene function on a genomic scale. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Dec 25; 782(1-2):151-63. PMID: 12458004.
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      51. Deutschbauer A, Williams RM, Chu AM, Davis RW. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 Nov 26; 99(24):15530-5. PMID: 12432101.
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      52. Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Güldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kötter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookhai-Mahadeo S, Storms RK, Strathern JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA, Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW, Johnston M. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 2002 Jul 25; 418(6896):387-91. PMID: 12140549.
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      53. Steinmetz LM, Scharfe C, Deutschbauer A, Mokranjac D, Herman ZS, Jones T, Chu AM, Giaever G, Prokisch H, Oefner PJ, Davis RW. Systematic screen for human disease genes in yeast. Nat Genet. 2002 Aug; 31(4):400-4. PMID: 12134146.
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