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    22837 Publications
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    Dernburg, Abby

    TitleBiologist Senior Faculty SE
    SchoolLawrence Berkeley National Lab
    DepartmentLife Sciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/666-3615

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Kim Y, Kostow N, Dernburg AF. The Chromosome Axis Mediates Feedback Control of CHK-2 to Ensure Crossover Formation in C. elegans. Dev Cell. 2015 Oct 26; 35(2):247-61.
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      2. Kim Y, Rosenberg SC, Kugel CL, Kostow N, Rog O, Davydov V, Su TY, Dernburg AF, Corbett KD. The Chromosome Axis Controls Meiotic Events through a Hierarchical Assembly of HORMA Domain Proteins. Dev Cell. 2014 Nov 24; 31(4):487-502.
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      3. Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ. Comparative analysis of metazoan chromatin organization. Nature. 2014 Aug 28; 512(7515):449-52.
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      4. Rosu S, Zawadzki KA, Stamper EL, Libuda DE, Reese AL, Dernburg AF, Villeneuve AM. The C. elegans DSB-2 protein reveals a regulatory network that controls competence for meiotic DSB formation and promotes crossover assurance. PLoS Genet. 2013; 9(8):e1003674.
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      5. Stamper EL, Rodenbusch SE, Rosu S, Ahringer J, Villeneuve AM, Dernburg AF. Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint. PLoS Genet. 2013; 9(8):e1003679.
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      6. Rog O, Dernburg AF. Chromosome pairing and synapsis during Caenorhabditis elegans meiosis. Curr Opin Cell Biol. 2013 Jun; 25(3):349-56.
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      7. Dernburg AF. Pushing the (nuclear) envelope into meiosis. Genome Biol. 2013; 14(3):110.
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      8. Vielle A, Lang J, Dong Y, Ercan S, Kotwaliwale C, Rechtsteiner A, Appert A, Chen QB, Dose A, Egelhofer T, Kimura H, Stempor P, Dernburg A, Lieb JD, Strome S, Ahringer J. H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation. PLoS Genet. 2012 Sep; 8(9):e1002933.
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      9. Dernburg AF. Molecular biology. RNA plays meiotic matchmaker. Science. 2012 May 11; 336(6082):681-2.
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      10. Dernburg AF. Formaldehyde fixation of Drosophila tissues onto slides for whole-mount FISH. Cold Spring Harb Protoc. 2012 May; 2012(5).
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      11. Dernburg AF. Hybridization to tissues on slides or coverslips for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2012 May; 2012(5).
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      12. Dernburg AF. Microdissection of Drosophila polytene chromosomes for DOP-PCR. Cold Spring Harb Protoc. 2012 Mar; 2012(3):376-9.
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      13. Dernburg AF. DOP-PCR amplification of probe DNA for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2012 Mar; 2012(3):380-4.
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      14. Wynne DJ, Rog O, Carlton PM, Dernburg AF. Dynein-dependent processive chromosome motions promote homologous pairing in C. elegans meiosis. J Cell Biol. 2012 Jan 9; 196(1):47-64.
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      15. Dernburg AF. Fragmentation and labeling of probe DNA for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2011 Dec; 2011(12):1527-30.
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      16. Dernburg AF. Hybridization to tissues in suspension for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2011 Dec; 2011(12):1534-7.
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      17. Dernburg AF. Manual dissection and fixation of Drosophila egg chambers for whole-mount FISH. Cold Spring Harb Protoc. 2011 Dec; 2011(12):1531-3.
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      18. Harper NC, Rillo R, Jover-Gil S, Assaf ZJ, Bhalla N, Dernburg AF. Pairing centers recruit a Polo-like kinase to orchestrate meiotic chromosome dynamics in C. elegans. Dev Cell. 2011 Nov 15; 21(5):934-47.
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      19. Dernburg AF. In situ hybridization to somatic chromosomes in Drosophila. Cold Spring Harb Protoc. 2011 Sep; 2011(9).
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      20. Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science. 2010 Dec 24; 330(6012):1775-87.
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      21. Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, Rosenbaum H, Shin H, Taing S, Takasaki T, Iniguez AL, Desai A, Dernburg AF, Kimura H, Lieb JD, Ahringer J, Strome S, Liu XS. Broad chromosomal domains of histone modification patterns in C. elegans. Genome Res. 2011 Feb; 21(2):227-36.
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      22. Sato A, Isaac B, Phillips CM, Rillo R, Carlton PM, Wynne DJ, Kasad RA, Dernburg AF. Cytoskeletal forces span the nuclear envelope to coordinate meiotic chromosome pairing and synapsis. Cell. 2009 Nov 25; 139(5):907-19.
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      23. Hiraoka Y, Dernburg AF. The SUN rises on meiotic chromosome dynamics. Dev Cell. 2009 Nov; 17(5):598-605.
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      24. Phillips CM, Meng X, Zhang L, Chretien JH, Urnov FD, Dernburg AF. Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans. Nat Cell Biol. 2009 Aug; 11(8):934-42.
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      25. Kotwaliwale CV, Dernburg AF. Old nuclei spring new leaks. Cell. 2009 Jan 23; 136(2):211-2.
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      26. Phillips CM, McDonald KL, Dernburg AF. Cytological analysis of meiosis in Caenorhabditis elegans. Methods Mol Biol. 2009; 558:171-95.
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      27. Bhalla N, Wynne DJ, Jantsch V, Dernburg AF. ZHP-3 acts at crossovers to couple meiotic recombination with synaptonemal complex disassembly and bivalent formation in C. elegans. PLoS Genet. 2008 Oct; 4(10):e1000235.
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      28. Martinez-Perez E, Schvarzstein M, Barroso C, Lightfoot J, Dernburg AF, Villeneuve AM. Crossovers trigger a remodeling of meiotic chromosome axis composition that is linked to two-step loss of sister chromatid cohesion. Genes Dev. 2008 Oct 15; 22(20):2886-901.
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      29. Bhalla N, Dernburg AF. Prelude to a division. Annu Rev Cell Dev Biol. 2008; 24:397-424.
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      30. Dernburg AF, Misteli T. Nuclear architecture--an island no more. Dev Cell. 2007 Mar; 12(3):329-34.
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      31. Phillips CM, Dernburg AF. A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans. Dev Cell. 2006 Dec; 11(6):817-29.
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      32. Carlton PM, Farruggio AP, Dernburg AF. A link between meiotic prophase progression and crossover control. PLoS Genet. 2006 Feb; 2(2):e12.
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      33. MacQueen AJ, Phillips CM, Bhalla N, Weiser P, Villeneuve AM, Dernburg AF. Chromosome sites play dual roles to establish homologous synapsis during meiosis in C. elegans. Cell. 2005 Dec 16; 123(6):1037-50.
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      34. Phillips CM, Wong C, Bhalla N, Carlton PM, Weiser P, Meneely PM, Dernburg AF. HIM-8 binds to the X chromosome pairing center and mediates chromosome-specific meiotic synapsis. Cell. 2005 Dec 16; 123(6):1051-63.
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      35. Bhalla N, Dernburg AF. A conserved checkpoint monitors meiotic chromosome synapsis in Caenorhabditis elegans. Science. 2005 Dec 9; 310(5754):1683-6.
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      36. Dernburg AF. Meiosis researchers exchange information in the Alps. Dev Cell. 2003 Nov; 5(5):691-3.
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      37. Dernburg AF, Karpen GH. A chromosome RNAissance. Cell. 2002 Oct 18; 111(2):159-62.
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      38. Kelly WG, Schaner CE, Dernburg AF, Lee MH, Kim SK, Villeneuve AM, Reinke V. X-chromosome silencing in the germline of C. elegans. Development. 2002 Jan; 129(2):479-92.
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      39. Lim CS, Mian IS, Dernburg AF, Campisi J. C. elegans clk-2, a gene that limits life span, encodes a telomere length regulator similar to yeast telomere binding protein Tel2p. Curr Biol. 2001 Oct 30; 11(21):1706-10.
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      40. Dernburg AF. Here, there, and everywhere: kinetochore function on holocentric chromosomes. J Cell Biol. 2001 Jun 11; 153(6):F33-8.
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      41. Read D, Butte MJ, Dernburg AF, Frasch M, Kornberg TB. Functional studies of the BTB domain in the Drosophila GAGA and Mod(mdg4) proteins. Nucleic Acids Res. 2000 Oct 15; 28(20):3864-70.
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      42. Kelly KO, Dernburg AF, Stanfield GM, Villeneuve AM. Caenorhabditis elegans msh-5 is required for both normal and radiation-induced meiotic crossing over but not for completion of meiosis. Genetics. 2000 Oct; 156(2):617-30.
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      43. Dernburg AF, Zalevsky J, Colaiácovo MP, Villeneuve AM. Transgene-mediated cosuppression in the C. elegans germ line. Genes Dev. 2000 Jul 1; 14(13):1578-83.
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      44. Dernburg AF, McDonald K, Moulder G, Barstead R, Dresser M, Villeneuve AM. Meiotic recombination in C. elegans initiates by a conserved mechanism and is dispensable for homologous chromosome synapsis. Cell. 1998 Aug 7; 94(3):387-98.
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      45. Fung JC, Marshall WF, Dernburg A, Agard DA, Sedat JW. Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations. J Cell Biol. 1998 Apr 6; 141(1):5-20.
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      46. Dernburg AF, Sedat JW. Mapping three-dimensional chromosome architecture in situ. Methods Cell Biol. 1998; 53:187-233.
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      47. Marshall WF, Straight A, Marko JF, Swedlow J, Dernburg A, Belmont A, Murray AW, Agard DA, Sedat JW. Interphase chromosomes undergo constrained diffusional motion in living cells. Curr Biol. 1997 Dec 1; 7(12):930-9.
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      48. Williams BC, Dernburg AF, Puro J, Nokkala S, Goldberg ML. The Drosophila kinesin-like protein KLP3A is required for proper behavior of male and female pronuclei at fertilization. Development. 1997 Jun; 124(12):2365-76.
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      49. Minshull J, Straight A, Rudner AD, Dernburg AF, Belmont A, Murray AW. Protein phosphatase 2A regulates MPF activity and sister chromatid cohesion in budding yeast. Curr Biol. 1996 Dec 1; 6(12):1609-20.
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      50. Franke A, Dernburg A, Bashaw GJ, Baker BS. Evidence that MSL-mediated dosage compensation in Drosophila begins at blastoderm. Development. 1996 Sep; 122(9):2751-60.
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      51. Dernburg AF, Daily DR, Yook KJ, Corbin JA, Sedat JW, Sullivan W. Selective loss of sperm bearing a compound chromosome in the Drosophila female. Genetics. 1996 Aug; 143(4):1629-42.
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      52. Dernburg AF, Sedat JW, Hawley RS. Direct evidence of a role for heterochromatin in meiotic chromosome segregation. Cell. 1996 Jul 12; 86(1):135-46.
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      53. Dernburg AF, Broman KW, Fung JC, Marshall WF, Philips J, Agard DA, Sedat JW. Perturbation of nuclear architecture by long-distance chromosome interactions. Cell. 1996 May 31; 85(5):745-59.
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      54. Marshall WF, Dernburg AF, Harmon B, Agard DA, Sedat JW. Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster. Mol Biol Cell. 1996 May; 7(5):825-42.
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      55. Hiraoka Y, Dernburg AF, Parmelee SJ, Rykowski MC, Agard DA, Sedat JW. The onset of homologous chromosome pairing during Drosophila melanogaster embryogenesis. J Cell Biol. 1993 Feb; 120(3):591-600.
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      56. Falke JJ, Dernburg AF, Sternberg DA, Zalkin N, Milligan DL, Koshland DE. Structure of a bacterial sensory receptor. A site-directed sulfhydryl study. J Biol Chem. 1988 Oct 15; 263(29):14850-8.
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